Seung-Jong Park's Publications

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    (Reverse chronological order)

    Big Data and Deep Learning for Computational Biology, Genome De Novo Assembly, Biomedical Image Analysis, Molecular Dynamic Simulation, etc.

    1. "Distributed de novo assembler for large-scale long-read datasets," "ayan Goswami, Kisung Lee, and Seung-Jong Park, the IEEE International Conference on Big Data, 2020.

    2. "Shallow Subsurface Environmental Remediation by Using Tracer-Surfactant-Foam Processes: History-Matching and Performance Prediction," H. Fleifel, M. Izadi, Seung-Jong Park, I. Gupta, G.S. Lee, and S.I. Kam, the Journal of Transport in Porous Media, p. 223-250, Vol. 131, Issue 1, 2020.

    3. "An OpenMP-based Parallel Execution of Neural Networks Specified in NNEF," Nakhoon Baek, Seung-Jong Park, 20th International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP), 2020.

    4. "Social and geographical disparities in Twitter use during Hurricane Harvey," Lei Zou, Nina S. N. Lam, Shayan Shams, Heng Cai, Michelle A. Meyer, Seungwon Yang, Kisung Lee, Seung-Jong Park & Margaret A. Reams, International Journal of Digital Earth, 12:11, 1300-1318, DOI: 10.1080/17538947.2018.1545878.

    5. "A hybrid and scalable error correction algorithm for indel and substitution errors of long reads," Arghya Das, Sayan Goswami, Kisung Lee, Seung-Jong Park, BMC Genomics 20, 948, 2019, https://doi.org/10.1186/s12864-019-6286-9.

    6. "ParLECH: Parallel Long-read Error Correction with Hadoop," Arghya Kusum Das, Kisung Lee and Seung-Jong Park, The IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, Dec, 2018.

    7. "A Distributed Semi-Supervised Platform for DNase-Seq Data Analytics using Deep Generative Convolutional Networks," Shayan Shams, Richard Platania, Joohyun Kim, Jian Zhang, Kisung Lee, Seungwon Yang, Seung-Jong Park, 9th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), Washington DC, Aug, 2018.

    8. "Deep Generative Breast Cancer Screening and Diagnosis," Shayan Shams, Richard Platania, Jian Zhang, Joohyun Kim, Seung-Jong Park, in the proceeding of the 21st International Conference on Medical Image Computing & Computer Assisted Intervention (MICCAI), Granada, Spain, 2018.

    9. "Towards Distributed Cyberinfrastructure for Smart Cities using Big Data and Deep Learning Technologies," Shayan Shams, Sayan Goswami, Kisung Lee, Seungwon Yang, Seung-Jong Park, in the proceeding of the 38th IEEE International Conference on Distributed Computing Systems (ICDCS), Vienna, Austria, 2018.

    10. "GPU-Accelerated Large-Scale Genome Assembly," Sayan Goswami, Kisung Lee, Shayan Shams and Seung-Jong Park, in the proceeding of the IEEE International Parallel & Distributed Processing Symposium (IEEE IPDPS), 2018, Vancouver, British Columbia CANADA.

    11. "Automated Breast Cancer Diagnosis Using Deep Learning and Region of Interest Detection (BC-DROID)," Richard Platania, Shayan Shams, Seungwon Yang, Jian Zhang, Kisung Lee, Seung-Jong Park, in the proceeding of the 8th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), 2017, Boston MA, USA.

    12. "Augmenting Amdahl's Second Law: A Theoretical Model to Build Cost-Effective Balanced HPC Infrastructure for Data-Driven Science," Arghya Kusum Das, Jaeki Hong, Sayan Goswami, Richard Platania, Kisung Lee, Wooseok Chang, Seung-Jong Park, Ling Liu, in the proceeding of the IEEE International Conference on Cloud Computing (CLOUD) 2017, Honolulu, USA.

    13. "Evaluation of Deep Learning Frameworks over Different HPC Architectures," Shayan Shams, Richard Platania, Kisung Lee and Seung-Jong Park, in the proceeding of the 37th IEEE International Conference on Distributed Computing Systems (ICDCS 2017), Atlanta, USA, 2017.

    14. "Hadoop-based replica exchange over heterogeneous distributed cyberinfrastructures," Richard Platania, Shayan Shams, Chui-Hui Chiu, Nayong Kim, Joohyun Kim, Seung-Jong Park, in the journal of Concurrency and computation: Practice and Experience, Wiley 2016, doi: 10.1002/cpe.3878.

    15. "Lazer: Distributed Memory-Efficient Assembly of Large-Scale Genomes," Sayan Goswami, Arghya Kusum Das, Richard Platania, Kisung Lee, and Seung-Jong Park, in the proceeding of the IEEE International Conference on Big Data (IEEE BigData), 2016.

    16. "Giraph-based Genome Assembler for Gigabase Scale Genomes," Praveen Kumar Kondikoppa, Arghya Kusum Das, Sayan Goswami, Richard Platania, Seung-Jong Park, in the proceeding of the 8th International Conference on Bioinformatics and Computational Biology (BICoB), pp.55-62, Las Vegas, USA, 2016.

    17. "Evaluating Different Distributed Cyber-Infrastructure for Data and Compute Intensive Scientific Applications", Arghya Kusum Das*, Seung-Jong Park, Jaeki Hong, Wooseok Chang, in the proceeding of the IEEE International Conference on Big Data (IEEE BigData 2015), 2015

    18. "Enabling Large-scale Biomolecular Conformation Search with Replica Exchange Statistical Temperature Molecular Dynamics (RESTMD) over HPC and Cloud Computing Resources," Nayong Kim, Richard Platania*, Tom Keyes, Wei Huang, Chris Knight, Seung-Jong Park, Joohyun Kim, in the proceeding of the 8th International Workshop on Bio and Intelligent Computing (BiCOM-2015), Korea, 2015.

    19. "Experimenting Big Data Applications for Genome Sequence Assembly over NSF-Cloud," Arghya Kusum Das*, Praveenkumar Kondikoppa*, Seung-Jong Park, in the Proceeding of the NSFCloud Workshop on Experimental Support for Cloud Computing, VA 2014.

    20. "MapReduce based Parallel Suffix Tree Construction for Human Genome," Praveenkumar Kondikoppa*, Umesh Chandra*, Seung-Jong Park, Manish Patil and Rahul Shah, in the proceeding of the 20th IEEE International Conference on Parallel and Distributed Systems (ICPADS), pp.664-670, Taiwan, Dec 2014.

    21. "MapReduce-based RESTMD: Enabling Large-scale Sampling Tasks with Distributed HPC Systems”, Praveenkumar Kondikoppa, Richard Platania, Seung-Jong Park, Shuju Bai, Tom Keyes and Jaegil Kim, Nayong Kim, and Joohyun Kim, in the proceeding of International Workshop for Science Gateways 2014.

    22. "An MPI-enabled MapReduce framework for molecular dynamics simulation applications" Bai, S.; Khosravi, E.; Seung-Jong Park, 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp.1-3, 18-21 Dec. 2013

    23. "A Hadoop approach to advanced sampling algorithms in molecular dynamics simulation on cloud computing" Niu, Jin; Bai, S.; Khosravi, E.; Seung-Jong Park, 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp.452-455, 18-21 Dec. 2013

    24. "Performance of REMD on cloud computing platform," Jin Niu, Shuju Bai, Ebrahim Khosravi, and Seung-Jong Park, 2013 MCBIOS conference, April 5-6, Columbia, Missouri, 2013.

    25. "Approximate string matching by position restricted alignment," Manish Patil, Xuanting Cai, Sharma V. Thankachan, Rahul Shah, Seung-Jong Park, David Foltz, EDBT/ICDT Workshops, 384-391, 2013.

    26. "Network-Aware Scheduling of MapReduce Framework on Distributed Clusters over High Speed Networks," Praveenkumar Kondikoppa, Seung-Jong Park, Chui-Hui Chiu, Cheng Cui and Lin Xue, Workshop on Cloud Services, Federation, and the 8th Open Cirrus Summit, San Jose, USA. 2012.

    27. "Investigating combinatorial approaches in virtual screening on human inducible 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (PFKFB3): A case study for small molecule kinases," Robert B. Crochet, Michael C. Cavalier, Minsuh Seo, Jeong Do Kim, Young-Sun Yim, Seung-Jong Park, and Yong-Hwan Lee, in the Journal of Analytical Biochemistry, Elsevier, Volume 418, Issue 1, 2011, pp.143-148.

    High Speed Optical Networks and Data Center Networks

    1. "Accelerating Serverless Computing by Harvesting Idle Resources", Hanfei Yu, Hao Wang, Jian Li, Xu Yuan, Seung-Jong Park, accepted at the ACM WEB (formerly known as International World Wide Web Conference) 2022, Lyon, France, April 2022.

    2. "Coflourish: An SDN-Assisted Coflow Scheduling Framework for Clouds," Chui-Hui Chiu, Dipak Kumar Singh, Qingyang Wang, Seung-Jong Park, in the proceeding of the IEEE International Conference on Cloud Computing (CLOUD) 2017, Honolulu, USA.

    3. "Minimal Coflow Routing and Scheduling in OpenFlow-based Cloud Storage Area Networks," Chui-Hui Chiu, Dipak Kumar Singh, Qingyang Wang, Kisung Lee, Seung-Jong Park, in the proceeding of the IEEE International Conference on Cloud Computing (CLOUD) 2017, Honolulu, USA.

    4. "Towards Fair and Low Latency Next Generation High Speed Networks: AFCD Queuing," Lin Xue, Suman kumar, Chui-Hui Chiu, Seung-Jong Park, in the journal of Network and Computer Applications, Elsevier, Vol 70, Issue C, pp. 183-193, 2016, doi: 10.1016/j.jnca.2016.03.021.

    5. "BIC-LSU: Big Data Research Integration with Cyberinfrastructure for LSU," Chui-hui Chiu, Nathan Lewis, Dipak Kumar Singh, Arghya Kusum Das, Mohammad M Jalazai, Richard Platania, Sayan Goswami, Kisung Lee, Seung-Jong Park, in the proceeding of the 2016 XSEDE Conference (XSEDE16), Miami, FL, USA, 2016.

    6. "FaLL: a Fair and Low Latency Queuing Scheme for Data Center Networks," Lin Xue*, Chui-Hui Chiu*, Suman Kumar*, Praveenkumar Kondikoppa*, Seung-Jong Park, in the Proceeding of the International Conference on Computing, Networking and Communications, (ICNC), 2015.

    7. "DMCTCP: Desynchronized Multi-Channel TCP for High Speed Access Networks with Tiny Buffers," Cheng Cui, Lin Xue, Chui-Hui Chiu, Praveenkumar Kondikoppa, Seung-Jong Park, in proceedings of the International Conference on Computer Communications and Networks(ICCCN 2014), Shanghai, China, 2014.

    8. "AFCD: An Approximated-Fair and Controlled-Delay Queuing for High Speed Networks," Lin Xue, Suman Kumar, Cheng Cui, Praveenkumar Kondikoppa, Chui-Hui Chiu, Seung-Jong Park, in proceedings of the International Conference on Computer Communications and Networks(ICCCN 2013), Nassau, Bahamas, 2013.

    9. "Impact of Loss Synchronization on Reliable High Speed Networks: A Model Based Simulation," Suman Kumar, Lin Xue, and Seung-Jong Park, Journal of Computer Networks and Communications, vol. 2014, Article ID 795489, 12 pages, 2014, doi:10.1155/2014/795489.

    10. "An Evaluation of Fairness Among Heterogeneous TCP Variants Over 10Gbps High-speed Networks", Lin Xue, Suman Kumar, Cheng Cui, Seung-Jong Park, in proceedings of the 37th Annual IEEE Conference on Local Computer Networks (LCN 2012), Clearwater, FL, 2012.

    11. "Experimental Evaluation of the Effect of Queue Management Schemes on the Performance of High Speed TCPs in 10Gbps Network Environment," Lin Xue, Cheng Cui, Suman Kumar, Seung-Jong Park, in the proceeding of the International Conference on Computing, Networking and Communications (ICNC 2012), Hawaii, USA, 2012.

    12. "A fluid-based simulation study: the effect of loss synchronization on sizing buffers over 10Gbps high speed networks," Suman Kumar, Mohammed Azad, and Seung-Jong Park, at the proceeding of the 8th International Workshop on Protocols for Future, Large-Scale & Diverse Network Transports (PFLDNeT), Lancaster, PA, 2010.

    13. "A Loss-Event Driven Scalable Fluid Simulation Method for High Speed Networks ," Suman Kumar, Seung-Jong Park, and S. Sitharama Iyengar, in the Journal of Computer Networks, Elsevier, Volume 54, Issue 1, 2010, pp.112-132.

    14. "Measurement and Performance Issues of Transport Protocols over 10Gbps High Speed Optical Networks," Yixin Wu, Suman Kumar, and Seung-Jong Park, in the Journal of Computer Networks, Elsevier, Volume 54, Issue 3, 2010, pp.475-488.

    15. "On Transport Protocol Performance Measurement over 10Gbps High Speed Optical Network," Yixin Wu, Suman Kumar and S.-J. Park, at the proceeding of The 18th International Conference on Computer Communications and Networks (ICCCN), 2009.

    16. "Time-Adaptive Numerical Simulation for High Speed Networks," S. Kumar, S.-J. Park, S. Iye ngar, and J.-H. Kimn, in the Proc. of High Performance Computing, Networking and Communication System ( HPCNCS-07), Orlando, FL, 2007.

    17. "EnLIGHTened Computing: An Architecture for Co-allocating Network, Compute, and other Grid Resources for High-End Applications," L. Battestilli, A. Hutanu, G. Karmous-Edwards, D. Katz, J. MacLaren, J. Mambretti, H. Moore, S-J Park, H. Perros, S. Sundar, S. Tanwir, S. Thorpe, and Y. Xin, in the proceeding of IEEE Honet'07, Dubai, UAE, November 2007.

    18. "ACKNET, A Synthetic, Reliable, and Accurate Network Emulator over Long Fat Networks," Y. Zhou, Y. Yuan and S.-J. Park, in the Proc. of the 17th Annual Argonne Symposium for Undergraduates in Science, Engineering and Mathematics, Nov, 2006.

    Wireless Sensor Networks

    1. "Congestion-Aware Topology Controls for Wireless Multi-hop Networks," Seung-Jong Park and R. Sivakumar, in the Journal of Ad-hoc Networks, Elsevier, Volume 8, Issue 3, 2010, pp. 295-312.

    2. "Probability Model for Data Redundancy Detection in Sensor Networks," Suman Kumar and S.-J. Park, in the Special Issue of the Journal of Mobile Information Systems, Volume 5, Number 2, 2009, pp.195-204.

    3. "A Scalable Correlation Aware Aggregation Strategy for Wireless Sensor Networ ks," Y. Zhu, R. Vedantham, S.-J. Park and R. Sivakumar, in Elsevier Information Fusion Journal, Vol9, Issue 3, July, pp.354-369, 2008.

    4. "GARUDA: Achieving Effective Reliability for Downstream Communication in Wireless Sensor Networks," S.-J. Park, R. Vedantham, R. Sivakumar and I. Akyildiz, in the journal of IEEE transactions on Mobile Computing, Vol.7, No.2, pp.214-230, Feb, 2008.

    5. "Energy Efficient Correlated Data Aggregation for Wireless Sensor Networks," S.-J. Park and R. Sivakumar, in the special issue of International Journal of Distributed Sensor Networks, Vol.4, Issue 1, pp.7-13, 2008.

    6. "Sink-to-Sensors Congestion Control," R. Vedantham, S.-J. Park and R. Sivakumar in the journal of Elsevier Ad Hoc Networks Journal, vol 5, no. 4, pp462-485, May 2007.

    7. "Scalable Approach for Reliable Downstream Data Delivery in Wireless Sensor Networks,"Seung-Jong Park, Ramanuja Vedantham, Raghupathy Sivakumar and Ian F. Akyildiz, the Proceedings of ACM International Symposium on Mobile Ad hoc Networking and Computing (MOBIHOC), pp78-89, Japan, May 2004.

    8. "Sink-to-Sensors Communication Reliability in Sensor Networks," Seung-Jong Park and Raghupathy Sivakumar, In ACM SIGMOBILE Mobile Computing and Communications Review (Extended Abstract, Mobihoc'03), Volume 7, Issue 3, pp.27 - 28, July 2003.

    Wireless Ad-hoc Networks

    1. "Transport Layer Protocols in Ad Hoc Networks," K. Sundaresan, Seung-Jong Park, and R. Sivakumar, the book of Ad Hoc Networks: Technologies and Protocols published, Springer, pp.123-152, 2004.

    2. "TCP Performance over Mobile Ad-hoc Networks: A Quantitative Study," V. Anantharaman, Seung-Jong Park, K. Sundaresan, and R. Sivakumar, Journal of Wireless Communications and Mobile Computing (WCMC), vol 4, Issue 2, pp203-222, Mar 2004.

    3. "Adaptive Topology Control for Wireless Ad-hoc Networks," Seung-Jong Park and Raghupathy Sivakumar, In ACM SIGMOBILE Mobile Computing and Communications Review (Extended Abstract, Mobihoc'03), Volume 7, Issue 3, pp.37 - 38, July 2003.

    4. "Load-sensitive Transmission Power Control in Wireless Ad-hoc Networks," Seung-Jong Park and Raghupathy Sivakumar, In proceeding of IEEE Globecom, Taiwan, 2002.

    5. "Quantitative Analysis of Tranmission Power Control in Wireless Ad-Hoc Network," Seung-Jong Park and Raghupathy Sivakumar, In proceeding of International Conference on Parallel Processing 2002, Vancouver, Canada, 2002.

    Cellular Networks

    1. "Optimal power allocation in CDMA forward link using dependencies between pilot and traffic channels," Seung Jong Park, Dongwoo Kim, and Chang-Yeon Kim, In proceeding of 50th IEEE Vehicular Technology Conference (VTC), Amsterdam, The Netherlands, Sept., 1999.

    2. "Scaling power up to resist SIR measurement error in CDMA mobile systems," Dongwoo Kim, Seung Jong Park, and J. Lee, In proceedings of CDMA International Conference (CIC), pp. 419-422, Seoul, Korea, 1998.

    3. "Optimal channel separation in CDMA mobile systems," Seung Jong Park and Dongwoo Kim, In proceeding of CDMA International Conference, pp. 419-422, Korea, 1997.

    4. "Frequency coordination between adjacent carriers of two CDMA operators," Seung Jong Park, et al, In proceeding of 48th IEEE Vehicular Technology Conference, pp. 1458-1461, Atlanta, USA, 1996.

    5. "Complexity reduction method for vector sum excited linear prediction coding," Sung Joo Kim, Seung Jong Park, Yung-Hwan Oh, In proceeding of International Conference on Spoken Language Processing, pp. 2071~2074, Japan, 1994.